OTHER INFORMATION
−Removed: During the three months ended September 30, 2025, no director or officer of the Company adopted , terminated or modified a “Rule 10b5-1 trading arrangement” or “non-Rule 10b5-1 trading arrangement,” as defined in Item 408(a) of Regulation S-K of the Exchange Act.
−Removed: Number Description
+Added: During the three months ended March 31, 2026 , no director or officer of the Company adopted , terminated or modified a “Rule 10b5-1 trading arrangement” or “non-Rule 10b5-1 trading arrangement,” as defined in Item 408(a) of Regulation S-K of the Exchange Act.
Amended and Restated Certificate of Incorporation, as amended (incorporated by reference to Exhibit 3.1 to Registrant’s Quarterly Report on Form 10-Q, filed with the SEC on November 8, 2023).
23 unchanged sentences
Form of Pre-Funded Warrant to Purchase Common Stock issued to Investors in January 2025 Registered Direct Offering (incorporated by reference to Exhibit 4.2 to the Registrant’s Current Report on Form 8-K, filed with the SEC on January 6, 2025).
−Removed: 4.18 Description of the Company’s Securities (incorporated by reference to Exhibit 4.5 to the Registrant's Annual Report on Form 10-K, filed with the SEC on March 5, 2024).
Form of Pre-Funded Warrant to Purchase Common Stock issued to Investors in September 2025 Offering (incorporated by reference to Exhibit 4.
2 unchanged sentences
2 to the Registrant’s Current Report on Form 8-K, filed with the SEC on September 18, 2025).
−Removed: 10.1 Sixth Amendment to the Lease by and between the Registrant and The Irvine Company, LLC, dated June 27, 2025 (incorporated by reference to Exhibit 10.1 to the R egistrant ’ s Current Report on Form 10-Q, filed with the SEC on August 1 4, 2025) .
−Removed: Form of Securities Purchase Agreement, dated September 16, 2025 , by and among the Company and the Purchasers named therein (incorporated by reference to Exhibit 10.1 to the Registrant’s Current Report on Form 8-K, filed with the SEC on Se ptember 18 , 202 5 ).
−Removed: 31.1 Certification of Principal Executive Officer pursuant to Rules 13a-14(a) and 15d-14(a) promulgated under the Securities Exchange Act of 1934, as amended.
+Added: Certification of Principal Executive Officer and Principal Financial Officer pursuant to Rules 13a-14(a) and 15d-14(a) promulgated under the Securities Exchange Act of 1934, as amended.
Certification of Principal Executive Officer and Principal Financial Officer pursuant to 18 U.S.C.
Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002.
−Removed: 101.INS Inline XBRL Instance Document—the instance document does not appear in the Interactive Data File as its XBRL tags are embedded within the Inline XBRL Document.
−Removed: 101.SCH Inline XBRL Taxonomy Extension Schema Document.
−Removed: 101.CAL Inline XBRL Taxonomy Extension Calculation Linkbase Document.
−Removed: 101.DEF Inline XBRL Taxonomy Extension Definition Linkbase Document.
−Removed: 101.LAB Inline XBRL Taxonomy Extension Label Linkbase Document.
−Removed: 101.PRE Inline XBRL Taxonomy Extension Presentation Linkbase Document.
+Added: Inline XBRL Instance Document—the instance document does not appear in the Interactive Data File as its XBRL tags are embedded within the Inline XBRL Document.
+Added: Inline XBRL Taxonomy Extension Schema with Embedded Linkbase Documents.
Cover Page Interactive Data File (formatted in Inline XBRL and contained in Exhibit 101)
6 unchanged sentences
BIONANO GENOMICS, INC.
−Removed: November 13, 2025
−Removed: Erik Holmlin, Ph.D.
−Removed: Erik Holmlin, Ph.D.
−Removed: President and Chief Executive Officer
−Removed: (Principal Executive and Financial Officer)
+Added: /s/ Albert A.
+Added: Luderer, Ph.D.
+Added: Luderer, Ph.D.
+Added: Interim Chief Executive Officer
+Added: (Interim Principal Executive Officer and Interim Principal Financial Officer)
Compared sentence by sentence after normalising whitespace, quotation marks, case and digits, so re-formatting and restated figures do not read as changed language. Wording changes appear as one removal and one addition. The current filing and the prior one are authoritative.